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Species belonging to selected taxon:
Citrus sinensis
ABOUT THIS RECORD
ID:
MNEST046788
species:
Citrus sinensis
miRNA family:
MIR166
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC
miRNA*
GGAATGTTGTCTGGCTCGAGG
mismatches:
4
bulges:
0
View larger
pre-miRNA
GG
GGAATGTTGTCTGGCTCGAGG
CCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCCATAAAATTTAATTATAT
TGAGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACG
TCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((
((((((..((((((..(((.(
.(((((((((((((..((((...((((((((((((..((.((((...................)))).)))))).))
))))))....))))..)))))...........)))))))).).
)))..))))))..))))))))
SIMILARITIES
miRBase
ctr-MIR166
:
6e-90
PMRD
vvi-miR166e
:
0.0000000001
microPC
miR166
:
9e-89
UniProt
no hits
RFAM
mir-166: 0.0000000002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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